Index

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__init__() (aplusml.models.History method) (aplusml.models.Patient method) (aplusml.models.State method) (aplusml.models.Transition method) (aplusml.models.Utility method) (aplusml.sim.Simulation method)

_html_escape() (in module aplusml.draw)

A

aplusml.config module aplusml.draw module aplusml.models module aplusml.parse module

aplusml.plot module aplusml.run module aplusml.sim module

C

calc_model_performance_metrics() (in module aplusml.plot) calc_pearsonr() (in module aplusml.plot) calc_spearmanr() (in module aplusml.plot) Config (class in aplusml.config) ConfigMetadata (class in aplusml.config) ConfigPatientSortPreferenceProperty (class in aplusml.config) ConfigState (class in aplusml.config) ConfigTransition (class in aplusml.config)

ConfigUtility (class in aplusml.config) ConfigVariable (class in aplusml.config) create_from_config() (aplusml.sim.Simulation class method) create_from_yaml() (aplusml.sim.Simulation class method) create_node_label() (in module aplusml.draw) create_patients_for_simulation() (aplusml.sim.Simulation method) current_state (aplusml.models.Patient attribute) current_timestep (aplusml.models.History attribute) (aplusml.sim.Simulation attribute)

D

dest (aplusml.models.Transition attribute) draw_workflow_diagram() (aplusml.sim.Simulation method)

duration (aplusml.models.State attribute) (aplusml.models.Transition attribute)

E

evaluate_duration() (aplusml.sim.Simulation method) evaluate_expression() (aplusml.sim.Simulation method) evaluate_transition_if() (aplusml.sim.Simulation method)

evaluate_transition_prob() (aplusml.sim.Simulation method) evaluate_utility_if() (aplusml.sim.Simulation method) evaluate_utility_value() (aplusml.sim.Simulation method) evaluate_variables() (aplusml.sim.Simulation method)

G

get_all_utility_units() (aplusml.sim.Simulation method) get_df_utility_from_df_preds() (in module aplusml.plot) get_state_history() (aplusml.models.Patient method)

get_sum_utilities() (aplusml.models.Patient method) get_unit_utility_baselines() (in module aplusml.sim) get_variables_in_conditional() (aplusml.models.Transition method)

H

history (aplusml.models.Patient attribute)

History (class in aplusml.models)

I

id (aplusml.models.Patient attribute) (aplusml.models.State attribute) if_ (aplusml.models.Transition attribute) (aplusml.models.Utility attribute) init_patients() (aplusml.sim.Simulation method) init_run() (aplusml.sim.Simulation method) init_variables() (aplusml.sim.Simulation method) is_conditional_if() (aplusml.models.Transition method) (aplusml.models.Utility method)

is_conditional_prob() (aplusml.models.Transition method) is_keys_valid() (in module aplusml.parse) is_valid() (aplusml.config.Config method) (aplusml.config.ConfigMetadata method) (aplusml.config.ConfigState method) (aplusml.config.ConfigTransition method) (aplusml.config.ConfigUtility method) (aplusml.config.ConfigVariable method) is_valid_config_yaml() (in module aplusml.parse) is_valid_patients() (aplusml.sim.Simulation method)

L

label (aplusml.models.State attribute) (aplusml.models.Transition attribute) load_seismometer_patients_for_simulation() (aplusml.sim.Simulation method)

load_yaml() (in module aplusml.parse) log() (aplusml.sim.Simulation method) log_patients() (in module aplusml.sim)

M

make_model_utility_plots() (in module aplusml.plot) metadata (aplusml.sim.Simulation attribute) module aplusml.config aplusml.draw aplusml.models aplusml.parse aplusml.plot aplusml.run aplusml.sim

P

parse_yaml_into_config() (in module aplusml.parse) Patient (class in aplusml.models) plot_bar_mean_utilities() (in module aplusml.plot) plot_calibration_curve() (in module aplusml.plot) plot_confusion_matrix() (in module aplusml.plot) plot_decision_curve() (in module aplusml.plot) plot_dodged_bar_mean_utilities() (in module aplusml.plot) plot_hist_pred() (in module aplusml.plot) plot_line_compare_multiple_settings() (in module aplusml.plot) plot_line_mean_utilities() (in module aplusml.plot) plot_mean_utility_v_threshold() (in module aplusml.plot) plot_ppv_v_utility_curve() (in module aplusml.plot)

plot_precision_recall_curve() (in module aplusml.plot) plot_pred_v_true() (in module aplusml.plot) plot_relative_utility_curve() (in module aplusml.plot) plot_roc_curve() (in module aplusml.plot) plot_threshold_v_ppv_tpr_work() (in module aplusml.plot) plot_threshold_v_utility_curve() (in module aplusml.plot) plot_work_v_ppv_tpr_fpr() (in module aplusml.plot) plot_work_v_utility() (in module aplusml.plot) print() (aplusml.models.State method) (aplusml.models.Transition method) prob (aplusml.models.Transition attribute) properties (aplusml.models.Patient attribute)

R

repr_state_history() (aplusml.models.Patient method) resource_deltas (aplusml.models.Transition attribute)

run() (aplusml.sim.Simulation method) run_test() (in module aplusml.run)

S

select_transition() (aplusml.sim.Simulation method) serialize() (aplusml.models.State method) (aplusml.models.Transition method) Simulation (class in aplusml.sim) sort_patient_by_preference() (in module aplusml.sim)

start_timestep (aplusml.models.Patient attribute) State (class in aplusml.models) state_id (aplusml.models.History attribute) state_utility_idxs (aplusml.models.History attribute) state_utility_vals (aplusml.models.History attribute) states (aplusml.sim.Simulation attribute)

T

test_diff_thresholds() (in module aplusml.run) Transition (class in aplusml.models) transition_idx (aplusml.models.History attribute)

transition_utility_idxs (aplusml.models.History attribute) transition_utility_vals (aplusml.models.History attribute) transitions (aplusml.models.State attribute) type (aplusml.models.State attribute)

U

unit (aplusml.models.Utility attribute) utilities (aplusml.models.State attribute) (aplusml.models.Transition attribute)

Utility (class in aplusml.models)

V

value (aplusml.models.Utility attribute)

variable_history (aplusml.sim.Simulation attribute) variables (aplusml.sim.Simulation attribute)